Scaffold Ga0335063_0000128

Overview

Basic Information

• Taxon OID: 3300034111
• Scaffold ID: Ga0335063_0000128
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37312
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (68.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018535	Metagenome / Metatranscriptome	234	Y
F028501	Metagenome / Metatranscriptome	191	Y
F042220	Metagenome	158	Y
F102853	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335063_0000128_29570_29758	F102853	N/A	MKELVLVYYAAIVVATVGFLAFFVPEPRRPTPAECGVAEIAPDMSARDREICRQLRQHRHRM
Ga0335063_0000128_4012_4215	F042220	AGG	MNKYIQKQIEASERLYTIMLADHKERFDKIAEIYSLSEHLQKKLDERDAEIAELRLQLRAYEVMERM
Ga0335063_0000128_4342_4599	F018535	GGAGG	MKTHTDTSGPQWPQHLWPYTYTHGDTELLCFVDWEPADRSVGWNGGAWLIHAYAGGVDVVDLLKDHIIKDIEREAAEALLEGPTC
Ga0335063_0000128_5081_5308	F028501	AGG	MKTITAKYTGTCAATGARILAGDLIQWAKGRAVLLERRRTAVDTITLYGESGPQTYYQNARGRCIDAPCCGCCTI