NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335063_0000085

Scaffold Ga0335063_0000085


Overview

Basic Information
Taxon OID3300034111 Open in IMG/M
Scaffold IDGa0335063_0000085 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42603
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (47.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013505Metagenome / Metatranscriptome270Y
F021068Metagenome / Metatranscriptome220Y
F034858Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0335063_0000085_30106_30345F013505N/AMHRTIEGHREDPYLAKLEADRQAQHSGYGVQSYLCADGSIKWEAYGWERMTEFQLHTTSYGLFDHKWQAEQYFNSIING
Ga0335063_0000085_5239_5955F021068GAGGMQPSDYTIYAVCIPGEKVRYEARSSIVPIMGGAYALSSEEREALRLQGYVFDDENASLSRLNGRWGELSCISWMILNANEKNIGNAQYRRNWLEPNDQWYDENTLYFPEPALFNCTLEQQFYGGHSAFDAPVITRELADSGSWIFSREEIDAIWRQNSFIGCNMARGGNVQYKQFMSALFVALAPIWHKHEEQFLRIGGYDKRALAFIAERLITGMVLYRDKLFPGMSIATAPIGFIH
Ga0335063_0000085_7949_8644F034858AGGAGGMILPEGSIRFCISTCKKFAPHTIPVIIPSLLAAGLKPEEILIVNGGQTVRAFTSYKNVPMLLTQQNSFEYTPLIEIVEHSMESPYWFLLHDTCIAGPTFRQLAYKPPVEAPEKVAMKHTPSMSIGLYRHDYLMAHKERLMAIKNTDSSPEALQQWKQWGVPNEDYMLWKLQDVPCHIYHPDKHGPDEWNYQGHADPYGTGMQRRIEYFPQLELAKAKSNWQGMQPHLCIDI
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