NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335055_0011554

Scaffold Ga0335055_0011554


Overview

Basic Information
Taxon OID3300034110 Open in IMG/M
Scaffold IDGa0335055_0011554 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4132
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000763Metagenome / Metatranscriptome901Y
F073254Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0335055_0011554_1451_1594F000763AGGAMNMKNPAILTAGAFLSAWAASNFAADYRSILWAVLAGVFGYATPAKR
Ga0335055_0011554_3055_4131F073254N/AITYDVNDSVVIKVKNSSGTYIPIFGGDITDINVTVATGEPAITQNIIITALGALSKLPKTLTEGVLSKAYDGDQIYTILSELLFNTWLEVPAAETWAAYNATTTWANAENSGLGEIDRPGDYELTARSASTTDVYSLVANLAKSGLGYIYEDSSGRIGYADSTHRSEYLAANGYAYVDGGWAYAASISTSKRLGDLRNKITITYKNSQQETAEDATSITTYGVQAENILTTIENGADAESQAEFYLDIRAYPQYQFKAITFPMANPNIPDASRDQALNIFMGLPIDIEDLPLNIADGRYQGFIEGWTWTSRFNALDLTIIVSPVAYSLQAFRWNNVPIGETWNTLSPTLDWNNATIVA
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