NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335055_0011538

Scaffold Ga0335055_0011538


Overview

Basic Information
Taxon OID3300034110 Open in IMG/M
Scaffold IDGa0335055_0011538 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4134
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002044Metagenome / Metatranscriptome599Y
F002162Metagenome / Metatranscriptome588Y
F002357Metagenome / Metatranscriptome567Y
F042333Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0335055_0011538_2313_2975F002357GGAGGMAFNLADYEDVATLNKWFISNFPSGRSDISVISHDAVNGYILVQSTLWRDSKDEQPAVSNIAFGSRETYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVDVEPNQYEKKLAERRYSPPGTKSAAVEDALRASFAVENKEADPQQWTVSEVVDQIASATPNEPPACEHGHILKQGISKGGKPYYGYVCKAKQCEPKWAKITTNGKWYFEGGE
Ga0335055_0011538_3113_3319F002162GAGGMLFLSFNQSNSIVPNYEYACDREGSSIVLDLPMQHEIPLCQVCGFELSRVWTAVPAIFKGKGWAGKGG
Ga0335055_0011538_3363_3548F042333GAGMDGYDTADGFRVYQCLKCCAIGTKNLAEATDTQEPIIRCDQCGSWQFVDQQCHTCELIGA
Ga0335055_0011538_683_940F002044N/AMANTRKPIKRKKINRRVVRHTPEPLSKIDQHYLALHTCYSAARKAGFTPEHAFWLMTEHKTFPDWVVGDGGIIPSIDPTDDEDDD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.