Scaffold Ga0335055_0001590

Overview

Basic Information

• Taxon OID: 3300034110
• Scaffold ID: Ga0335055_0001590
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12351
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037723	Metagenome	167	Y
F084245	Metagenome / Metatranscriptome	112	N
F101157	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335055_0001590_3645_3860	F084245	N/A	MNFELITAKYDCRCSLTGKKFSRGDQVYYNYEAKTFLDPVYHENIMSQQKSRGAQSYFERHKKLNKIYPNT
Ga0335055_0001590_3912_4157	F101157	N/A	MGVGIFLTPKNLKHMAKFEFVTETNVVTQSVIYYTRKDELFMENSLSHSKEKAYDRFINISSGVKTEPIVQVIETRYLITK
Ga0335055_0001590_9419_9778	F037723	AGAAG	MKPITKTNNMKQVYVENNMGEGMEYDYDLKYEDGKTVCLYSHNSEWTEHLQGQKAGSIKDVGHGVVIKIGEQKMTLDYAEMQVLKILLLSDLEGTDYFEIRESITIKAWPRDIETGENL