Scaffold Ga0335055_0001229

Overview

Basic Information

• Taxon OID: 3300034110
• Scaffold ID: Ga0335055_0001229
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14320
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F040590	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335055_0001229_2865_3182	F003521	AGG	MKSLVLNIRNYFNQRTRAVDAHKEADVTRKTLVIENGESAMRLIKNEDFALLFNLYRFNMLERLEDSRADPERIENAHYVAGVRDFIGFIEKTEYLGKVAKKSNT
Ga0335055_0001229_3_506	F000857	N/A	MEKAMTEDEDIKVNEKYYSEGILEGGIDGVFRHNDKLYNEVKSGTWSQTFKTDNIDYKVGAIDGTRYVQYNQKNVENVREFCKQQREFYKVHGTDNPFFAGTAHMMQLPKCFAHEISSKWFNNRPWELIKQDKEDKILFYAIVNEYYSDFVCHPSGKIPIPYNPAIPT
Ga0335055_0001229_3192_5357	F004695	GGA	MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSEQANQATEMVKYMINSKNDSYAVIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRKIDVDLEGVMQDVVENEEATIDTAADEMNSAIQANTIYRAKYKMTGFSTSVRIKHVAQHYFVCNPTIPGIQDQDFVGFYDPMTIHECKAQYPYVDLEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDPAKHIYEFGAMQGNLAYVQSSMQRFESDKMAMIGMTSPNDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDMIYIVWKTLIQYSDDYNIQQLAGVCAKGKPFMDAISMNNYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFAQLMMGLDPNVPELFMKARRPFEDTLRVLGVKDVDAYLPTLEEAAKIMQANAEKGPSPEQQEMQSKTELNKAKTEETIANTLFTQKKAEDIDTDNMFEALAAKRGKLTSIQV
Ga0335055_0001229_7687_8328	F001059	AGGA	MATYDIAALKEDLPTAKDLAQFVYDKTSIALDLVGKPKEEQYQVAKNALEGKKIPSDYQTDLNPYIDRKELIPVDDKRVLPPRSKDLPDEGSQVHFFGATNMPHPLDPQSDKKVQINFRKYDNGVITFQVMGPLEQVAIGERINKFGQKQPEKYSWIDPRTEEMVLRRADGTYTEKGRGMYAYCIGEKGGGIWSLIDRELLNIVQKNVTNPWV
Ga0335055_0001229_8567_8797	F040590	GAGG	MSYGKVISGGKAMTNGLTKGINNKLKGFEEGHKRSALLATAVGKTFNQNPLSDNHLNDINVAATKKFTVPKLPKSV
Ga0335055_0001229_9595_10200	F001915	AGGA	MQGGLFVRFALELKGKEMEWTLAHPLHDVDDIIEMADSLFGQEADGILTRDRNVFRKNVTLTATHQLFDKGREFLAVCRQKQEYEKVVIDGFVDYLCKEPKLLAYCWFDRGGYTTYSNEEISNAKFHHVDLSLPAKQRVRLINEMIDQHILWAHSWGIPVICSTSIRAEHTAFMKIHKKRGFTVNGSYAWIKTENGLKGLK