Scaffold Ga0335055

Basic Information
Taxon OID	3300034110 Open in IMG/M
Scaffold ID	Ga0335055_0001074 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034110 Open in IMG/M

Scaffold ID

Ga0335055_0001074 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15650
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (14.29%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

15650

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (14.29%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002045	Metagenome / Metatranscriptome	599	Y
F032658	Metagenome / Metatranscriptome	179	Y
F047682	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335055_0001074_10560_10754	F047682	GGA	MRSSTIICIRWKLTGRLEHFVNLGKVFTYYDSDELGVSRSILNRRNLFDGYQNDMIEIIKTYVK
Ga0335055_0001074_3472_4956	F032658	N/A	MKNVKQFNKFDLIKEESSPRLPVDEKYWLRKGKEGKNVALYTHDDMDGIFSAIEVKKYLLNKGFTIVKYGILNYTEGWKYTTLDPKLINVVLDFASMPGDERDDLIDYYLDHHGLFSAEDLEKYKSSPVQKKKTASAYEAICQALGVPQDSLTLDVIDMIDAAKYQDYEIDWQRLLDFNLSEIKKSPKRRLEFGAAFNQFIKRSDSKTIISVIENCPDASIYSIFNVMKKVYPEHNVTMGGPKRGEKKDFIEDSEWRLGEMQKKTRGSMTSKKTYNTQAEFTSQFKNGQYLQINGYQKIGDLVFVPTGTWANALRARTIVEKDFRDGVLDKEPNFILLQYGSTLQVCSYKKMDEIENLPKLRTGEVVSDLGKYMTDLLQNFQKHLGYYNPDTSLGQDEITVSGGHGGIGSISNVFGVCEQEQYKGLKYVDMFKNKIISDLSGVPFNLSLKWSEPAEYFNPKSPEMDNKVIATKDVTKLDKQGNLIKSFENFKTR
Ga0335055_0001074_845_1177	F002045	N/A	VNAIKNKYIIDINKIISEEEVDFTDDKTYLKILIFNKIQQAIDKKKDIYYIPDFDNEFSIEKLLNLKKILGENNFNVLIFYNEFRRNPEVMDDVFSNLSKFSNSQIIRDY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335055_0001074

Overview

Ecosystem & Geography

Associated Families

Sequences