Scaffold Ga0335055

Basic Information
Taxon OID	3300034110 Open in IMG/M
Scaffold ID	Ga0335055_0000465 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034110 Open in IMG/M

Scaffold ID

Ga0335055_0000465 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29610
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (29.79%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

29610

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (29.79%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010908	Metagenome / Metatranscriptome	297	Y
F014228	Metagenome	264	N
F015723	Metagenome / Metatranscriptome	252	Y
F015858	Metagenome / Metatranscriptome	251	Y
F024249	Metagenome	206	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335055_0000465_11481_11708	F010908	GAGG	MKQILSPFQKYECFSVDGIDYLVTDVTIIQDKDDNLVEWASEMKFKRLSDHKHFTMPMTKILTNHKEGRAKRCKC
Ga0335055_0000465_13027_13464	F015723	N/A	MPKIISITPTGMWQDLHKLEIRFDTGDFGTAFAKSQTPPYAVGEDVEYTKNEKGTVKIQRANAFGGGGYAPSAPSSPSFAAKTDDRSASIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGASSAPASHVEHFANRNDPF
Ga0335055_0000465_14779_15186	F014228	N/A	MNSKLNPNRLAMWTILLTATLAALSSCATVKPVLQSVVVRDTVIVTQTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVFVEATCLPDTIRVTQTKILTKEKKQRGWTLEGAAVTLGLILVVAYFIKKWIDKLVE
Ga0335055_0000465_18281_18601	F015858	AGAAGG	MANFISWGVVYCSTWFGQVDETTLSIQNQSAPPCFAPANEFVAQFETRVLNDGGTFEGFDCLTAALQDLGEDTYYDIFDTYIQRMTDDGATLEGEDCLIDQLFILN
Ga0335055_0000465_8986_9312	F024249	N/A	MIFTYNDLKFWLEDADLLPQSYWDALEDYDPDNKNSDEILAKFLGYVHVADFYNYEMDITYVEETYNEDGYTNTVAYPTTSIYGEAPKLADEIYTKWLNWATTVASEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335055_0000465

Overview

Ecosystem & Geography

Associated Families

Sequences