Scaffold Ga0335051_0017951

Overview

Basic Information

• Taxon OID: 3300034109
• Scaffold ID: Ga0335051_0017951
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3878
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002259	Metagenome / Metatranscriptome	577	Y
F019128	Metagenome / Metatranscriptome	231	Y
F048168	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335051_0017951_1855_2208	F019128	GGAG	MSAGKAALGGVAAAFLSNTVGKQLGDKYAPYTGLIGSVATSLFLKQPEIAAGMAGYAGAKIGQSLLGADSAIGALLAENSYNVSPSMYLQGYNTPGMAGEGIYASDYTLAGYDVPGL
Ga0335051_0017951_2243_2797	F002259	N/A	MGMSAQDKMITVANRLGLTSLKDMQGTTRMVYDSQTTAALTHTFFKGAAQRAFPLTNVGANGNQFQVDEALLVEKIGFFIPSAADGIAYGGLNGFSVKFDLVIGNKTVIKDATCEFAGEQAFYNDGNVGSSVIDLEGVGILIPPQVEYYVVAKPFDGVGRVASSQRLGCYLFGTGALLNFNTTI
Ga0335051_0017951_3450_3764	F048168	GGAG	LSLSGLAKAFEGIIFSATTSAAPATIINATQLRVTLTINNDVVIDDVVAHDLGASAAAGITTGFPNFIPFPRALTGQDTILLRVTNSSGASQLLNVAVYYKNEI