NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335051_0016809

Scaffold Ga0335051_0016809


Overview

Basic Information
Taxon OID3300034109 Open in IMG/M
Scaffold IDGa0335051_0016809 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4013
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003038Metagenome / Metatranscriptome511Y
F044374Metagenome / Metatranscriptome154Y
F065559Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0335051_0016809_1275_1958F003038N/AMALSTTDLGTASSGLPKTITPGNHVLKINSIELEDFKFIDGAYHLMMHVETQPIEGFEGFMIDKDDESKGRYAGQIGRVKASQYAFADGETKSGVKIQRDRSILIFLRTLAHTMGLDSWFLEQDGQHETIEDFVKAFNKTADFRGKFLEFCVAGKEYEGKSGYTNYDMWLPKAEGKKYAFGAIEAGAVIPFDETKHLKKLEVKEVKSFGDDDDVFLKPKTSSDFSLD
Ga0335051_0016809_3_536F044374N/AKFRKAQVSDPFFAIKTAFFQKGKFGKQVQLFEGELKRGEDIYIEFIEVNRDGSGKEIGVEPAFEDRPLFKYKHNPYFAEEYDVKEGTNSNGENYFAYTIPLSELMVVMPDGSEITQNLYEKRKAEAPKEQQTLSVFPDFEDEFIPKLKDVSLDEEESASDILLRIATEFQKLATKIK
Ga0335051_0016809_3417_3872F065559AGAAGMPIFLAGFTKQNSMNEINMMGTLVKLADLGVTGIKVQYEGSGDSGCIENTVYTTEKMDKDEEAAFDDINDIEVWYQDAKHLRELDSGLASDIENFVEDKLLQDIEDWWNNDGGYGSVCILIPSGKYKIYNDIRITQVESYFHEGSLIQKTL
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