Scaffold Ga0335051_0013978

Overview

Basic Information

• Taxon OID: 3300034109
• Scaffold ID: Ga0335051_0013978
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4421
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F002867	Metagenome / Metatranscriptome	524	Y
F004722	Metagenome	426	Y
F017122	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335051_0013978_107_358	F002317	N/A	MDHHEEAPTLIKPPENPFNQAVPALLTTAVIGLGGLFMQVAKLDQSVSTVAADIQELKNDSKERLSDLETRVRQIEMSIGNTK
Ga0335051_0013978_2715_3038	F017122	N/A	MEVVPFQEQQDPELRLGEGRSRTSAADAQLFELTIWLPGQGAMRDLVRAESLLQAIEFAQNRYPNCKVEVPSTAAKKPKLARAKNGPREAARRRLKLVEQKRGLSND
Ga0335051_0013978_355_540	F002867	GAG	MSVVNTTDYGNGYTLDQLENERGELYYRACKDSICRYAEDHYIAVMYLEGMGWDPKQQAP
Ga0335051_0013978_3660_3869	F004722	N/A	MSQPKTGRELVLEWLNREIRAAKTADLQRAAAFLEWAKDIRKGCAKQRGGARVAQANAWRKRVDDDVRW