Scaffold Ga0335051_0008865

Overview

Basic Information

• Taxon OID: 3300034109
• Scaffold ID: Ga0335051_0008865
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5584
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F051794	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335051_0008865_3630_3812	F002827	AGGAG	MNKEYYQAKADLCRDLAIKQMVNGEAKEAGANLIRMVNALNEINLINYKKEKASETNKLL
Ga0335051_0008865_3790_4017	F005146	AGGAG	VKLINFYEVMDRKGDIAWGGASVTDAVEWFRRGLDNSIFVSVWNEEDIEEPVLVTDKIEVTALVLATITSERSRG
Ga0335051_0008865_4084_4389	F051794	GGAGG	MKTIDKRRQNSEKRAVWLRNYQRARARALTKLAQQYPDQYKDLLEQERLADESMAKTWLDITGATSISSSLGVLTDRNNDTSRSEQANGDEQNEGNVGGEG