Scaffold Ga0335051_0003403

Overview

Basic Information

• Taxon OID: 3300034109
• Scaffold ID: Ga0335051_0003403
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8663
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F014605	Metagenome / Metatranscriptome	261	N
F049637	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335051_0003403_2557_2844	F014605	N/A	MIVNLAIALQDIEGNKITNENGEFMYLSKMVGNALFSAEEKEDPIRLYELAKKIYYSEGDIELSKSDADLVKEKVKAKGFTVLVLGPLYEALKEK
Ga0335051_0003403_2928_3122	F049637	N/A	MNILKSDELGVPSTFLAIFANVTAMAGLQMINVVFTSVISILSIVYLVYKIKNEIKKLKDNGKG
Ga0335051_0003403_4840_5388	F001775	N/A	MNFSTDNQKIKIATLAFLAGILVAYIFFPKSESETVYKFETVTNTDTLMVEVNDTVYVPKKWIKSQIIRDTILVDYKPQISLFKTSIPSEYGSTNVSGEVLGEVLKMTATNDFKIPVVTNTITNTETKTIIKKSKGIYLGASVNSLLQPGAKVSYLDNKYIFEYQYQPFTRSHQIGISKKLF