Scaffold Ga0335051_0000064

Overview

Basic Information

• Taxon OID: 3300034109
• Scaffold ID: Ga0335051_0000064
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37263
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (77.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009956	Metagenome / Metatranscriptome	310	Y
F019818	Metagenome / Metatranscriptome	227	Y
F052469	Metagenome	142	Y
F075868	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335051_0000064_23832_24026	F052469	AGGA	MGRPRKNPDDPKWNTEIKPSRDYDWNLFFAAALGGLIAKGGLSYDQLIKTASSIATEAQDSLSD
Ga0335051_0000064_25847_26059	F009956	GGCGG	MADNSKRDSEDVPWSLITVVLAVILMFFIVMPILAFMYYDMYYATQAAVIEVRKMRELRKEIQIERMYSK
Ga0335051_0000064_32376_32813	F019818	N/A	MLQQTKHTDISLSVDFRYIPVDELRNWWGTIRPGLEKVKTRSPENWIVEDVYTDCFNQKAMLWVALKNQRFAGFFILQPLGEELHVWAAWTLENDYQVVESGIKYIKEMARQAGNKYLTFSSHRQGWQRRAKALGFRPRRWICEV
Ga0335051_0000064_5875_6105	F075868	GGA	MSKAYWAEILLKDENFQEMMEELRSQEIAKFATSDYGQVEVRESAYRQLRALELIETYLEGLASDKLIEEKRLKIL