Scaffold Ga0335051_0000014

Overview

Basic Information

• Taxon OID: 3300034109
• Scaffold ID: Ga0335051_0000014
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56105
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (85.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038004	Metagenome / Metatranscriptome	167	Y
F099192	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335051_0000014_42730_42897	F038004	GGA	MDTHIVLTALWDYRETLTNGIAPNPPHIQARIASVDRLIASYKKSYFALDRLGLM
Ga0335051_0000014_5077_5244	F099192	AGGGGG	MRDFWVFVPLAGIALAAFFLYGIGQIIFADMEDYRLRYEHCIAADKQWVKGSCVK
Ga0335051_0000014_6032_6229	F038004	GGTGG	MAVRLGAMDTHIVLTALWDYRETLTNIPGDQPTPHIQVRDKIERVDRLIKHYRKSYFALDRLGIK