NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335050_0110417

Scaffold Ga0335050_0110417


Overview

Basic Information
Taxon OID3300034108 Open in IMG/M
Scaffold IDGa0335050_0110417 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1572
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016243Metagenome / Metatranscriptome248N
F022147Metagenome / Metatranscriptome215N
F039941Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0335050_0110417_1188_1439F039941N/AMDIETLALRLEEIKLNRLEVLEEKKVLAEELLDGRLRIQLKRSIMENMSLLIQLDLTLNEAEILYENLIECRLLHARYKQQSS
Ga0335050_0110417_23_442F016243N/AMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKYYLKSEYIQMHRPSFPNTNTIKDSKAEFTQRLLEVFDSRNSLKAQNSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVIYEFLIENCKNE
Ga0335050_0110417_448_993F022147GAGMQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKPEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKCRIQKSKDIATLEKVAIANKLLIKTLSEEVRNALKEQLALVSKVGSTFTNLSLMYTYIENNDLSLQSEAKSRQWSNEYQE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.