NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335050_0020568

Scaffold Ga0335050_0020568


Overview

Basic Information
Taxon OID3300034108 Open in IMG/M
Scaffold IDGa0335050_0020568 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4362
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041198Metagenome / Metatranscriptome160Y
F101172Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0335050_0020568_1826_2080F041198AGAAGMKVKCLNTSKYNQYDRLPLTVGKVYDVIEITNIPFNSRRYDDYTGPIYNLVNDKGEVSGYSDECVRLLTLDEVRELKINELINE
Ga0335050_0020568_5_640F101172N/AMSYLNEIKAYMRDINLDILMNCPDVKIDVSKRYYNKFRLFYPSRKLIKYTTNIGGVLVGSRAIRCFTINGKPILERRVNDWDFIVTLDMAFKICDDMGIEEIPKIGGVISVKNQRRWAHPSYQDSYRVGPVDVQLIVTEELPDYTEVDGVRIANFGYSISQKIGLTSELQSKLGGKTPNYRVSESIDEQYHKHIDDLKEIIIKYNSIKCKL
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