Scaffold Ga0335050_0000363

Overview

Basic Information

• Taxon OID: 3300034108
• Scaffold ID: Ga0335050_0000363
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31334
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (9.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F062749	Metagenome	130	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335050_0000363_1406_1567	F044325	N/A	MKALIQRLLFGYRINPAAYTPKGGAKLTHKGHNAEAIHSALVLLKFNLENAKN
Ga0335050_0000363_39_455	F041191	GGA	MKLLYKPTNLSCEFIISDFAKSEGVQKVIGFSRGWHHYNSIRLGIRKEENYCVLYFYAYIKGQRIIQRLGRYQIGDLVKVRLHWGYYIECKANDGYAFRVAPKCSFPIGYLLSPYAEKDGVEGIEVPLNIEIMNLKID
Ga0335050_0000363_452_643	F062749	N/A	MKTKPSLILWAISALFMSFWAIKFAMTGVFFGNSELLTFTLSFCASLTSAVCGAGFMQQWIKK
Ga0335050_0000363_646_813	F102493	N/A	METTLTLHWEYEETDRENNIRGGWVLIDTTNGNKQVHLSAKLEELINEELNPENF