NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335037_0045781

Scaffold Ga0335037_0045781


Overview

Basic Information
Taxon OID3300034107 Open in IMG/M
Scaffold IDGa0335037_0045781 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2356
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041191Metagenome160Y
F049410Metagenome146N
F062749Metagenome130Y
F102493Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0335037_0045781_1012_1428F041191AGCAGMKLLYKPTKLTCDIILPDLDKSHGVQKVIGFSRGWHHYNSIRLGIRKEDTYIVLYFYAYINGKRVIQRLGRFEIGEQVSVTLQWGYYIECKANDKYAFRVAPKRSFPIGYQLYPYAEKDGVRGVEVDIEIQINNLCVS
Ga0335037_0045781_119_304F049410N/AMTRGTRYTNGKEVITFVKIDFIAIGGRKIDHVYFRRKDKNDLIMPLLEWNLKGKFEWLIT
Ga0335037_0045781_1425_1616F062749N/AMKTKASLILWAAAALFMSFWAVKFAMTGMYYGNSEVLTFTLSFCASITSAVCGAGFMQQYLKK
Ga0335037_0045781_2217_2354F102493N/AYENDDRENGIRGGWVLTDITNGKTSVHLSPKLEQLINEELDPDNL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.