Scaffold Ga0335037_0045781

Overview

Basic Information

• Taxon OID: 3300034107
• Scaffold ID: Ga0335037_0045781
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2356
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335037_0045781_1012_1428	F041191	AGCAG	MKLLYKPTKLTCDIILPDLDKSHGVQKVIGFSRGWHHYNSIRLGIRKEDTYIVLYFYAYINGKRVIQRLGRFEIGEQVSVTLQWGYYIECKANDKYAFRVAPKRSFPIGYQLYPYAEKDGVRGVEVDIEIQINNLCVS
Ga0335037_0045781_119_304	F049410	N/A	MTRGTRYTNGKEVITFVKIDFIAIGGRKIDHVYFRRKDKNDLIMPLLEWNLKGKFEWLIT
Ga0335037_0045781_1425_1616	F062749	N/A	MKTKASLILWAAAALFMSFWAVKFAMTGMYYGNSEVLTFTLSFCASITSAVCGAGFMQQYLKK
Ga0335037_0045781_2217_2354	F102493	N/A	YENDDRENGIRGGWVLTDITNGKTSVHLSPKLEQLINEELDPDNL