Scaffold Ga0335037_0032288

Overview

Basic Information

• Taxon OID: 3300034107
• Scaffold ID: Ga0335037_0032288
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2809
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042157	Metagenome	158	N
F049410	Metagenome	146	N
F068425	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335037_0032288_1391_1576	F049410	GGA	MTRNTRYTNGNEIITFKKIDFIAIGGRKIDHVYFRRKDKNDLIMPLVEWNLKGKFEWEIT
Ga0335037_0032288_2_529	F068425	N/A	MKPHHQLITFAVLCLILIICLSKCAKEKPKVIPFDYKAEAEMMKKQFGIEQAILLNQLEAATRRLQVANNAKDSIRQRELSLSNTNIALLKKLRQTLPKECDTVFVLCDEIINVKDSSYAALFNAFQLCADGSTIKDSLIVAYKAENVTDSTLLAVSKHETKQQRKGKVAAWCVGG
Ga0335037_0032288_913_1167	F042157	N/A	MNLKQKYRSPDNRQLKKIADYLIYVLLPFIQTSLALAETQGLITLKQAFWGGLAATFLLINTKFLTKFTTETPTTTPLLDGDGC