NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335037_0026684

Scaffold Ga0335037_0026684


Overview

Basic Information
Taxon OID3300034107 Open in IMG/M
Scaffold IDGa0335037_0026684 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3090
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041191Metagenome160Y
F044325Metagenome154Y
F062749Metagenome130Y
F102493Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0335037_0026684_1728_1895F044325N/AMKQLIQRLLFGYRTNPNAYTPKGGAVLTQKGGNAEAIHSALVLMQYQIRHAKGIN
Ga0335037_0026684_2354_2521F102493N/AMETTLTLHWEFEQPDFENGIIGGWVLTDITNGKIPIHLSPKLEQLINEELDPDNL
Ga0335037_0026684_2525_2716F062749N/AMKTKASLILWAISALFMSFWAVKFAMTGVFFGNSEALTFTLSFFASLTSAVCGAGFMQQWLKK
Ga0335037_0026684_2713_3090F041191N/AMKLLYKPTKLTCDIIVPDLAKSDGVQKVIGFSRGWHHYNSIRLGIRKEDTYIVLYFYAYIDGKRVIQRLGRFEIGEQVSVTLQWGYYIECKANDKYAFRLAPKRSFPIGYQLFPYAEKDGVRGVEV

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