NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335037_0020773

Scaffold Ga0335037_0020773


Overview

Basic Information
Taxon OID3300034107 Open in IMG/M
Scaffold IDGa0335037_0020773 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3509
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041191Metagenome160Y
F044325Metagenome154Y
F062749Metagenome130Y
F102493Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0335037_0020773_1701_2129F041191AGGMVEKMKLLWKPTKLTCDIIIPDIEKSDGVQKVCGFSRGWHHWNSIRLGIRKENDYCVLYFYAYIKGERTIQRIGRYAIGDLVKCELNWGSYIECKANDGYAFRIAPRHSLPLGYQLYSYAEKDGVEGIEVPIDIEIMNLGIY
Ga0335037_0020773_2114_2305F062749N/AMKTKTSLILWAVSALFMSFWAVKFAMTGAENGNSDFLTFTLSLCASLTSAVCGAGFMQQWLKK
Ga0335037_0020773_2309_2476F102493N/AMTTTLTLHWEYENDDRENNIKGGWVLTDITNGNTPVYLSPKLEQLLNEELDPENF
Ga0335037_0020773_2584_2751F044325N/AMKQLIQRLLFGYRSNPAAYIPKGGAVLTQKGGNAEAIHSALVLMQYQIRNAEKIN

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