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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034107 Open in IMG/M |
| Scaffold ID | Ga0335037_0002895 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9100 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (16.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042157 | Metagenome | 158 | N |
| F049410 | Metagenome | 146 | N |
| F068425 | Metagenome | 124 | Y |
| F071219 | Metagenome | 122 | N |
| F100403 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335037_0002895_1157_1597 | F100403 | N/A | MDITSNIPFVIGNILAKFRELGNPETVSRAAAVAIEPELRYRIHVEGKNSSGAAIGTYSNSYLKIRERENRGTSTKVIISLTRQLENGYTLKATEKGYTIGNTSPANEEIIGHLTEKYGDIWQLTERELEMTQIVAQETALLIMNK |
| Ga0335037_0002895_5881_6084 | F071219 | N/A | MHSHHPDNSILVIITSVIIQAGVWTSDWFGNMNLVGIYDTIYDGAKLGALVVSMWASYRVAKKNKNE |
| Ga0335037_0002895_7143_7709 | F068425 | N/A | MKPHHQIITFAVLCLLLIIGLNHCAKDKPKPIPFDYKAEAELMKKQFGIEQAILLNQLENVNRRLQVATNAKDSIRKREISLTNTNIALMKKLRQTLPKECDTVFVLCDEIINVKDSSYAALFTAFQLCADGSTIKDSLIVAYKAENVTDSTLLAISKQETKQQRKGKVAAWCVGGAMFMLWLFVGLK |
| Ga0335037_0002895_8199_8432 | F042157 | GGA | MNLKQKYRSPDNKQLKKIADYLIYVLLPFIQTSLALAETQGLISLKQAFWGGLAATFLLINTKFLTKFTTEKPNELP |
| Ga0335037_0002895_8434_8619 | F049410 | GGA | MTRNTRYTNGKEVITFVKIDFMVIGGRKIDHVYFRRKDKHDLIMPLVEWNIKGKFEWTII |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |