Scaffold Ga0335037_0002092

Overview

Basic Information

• Taxon OID: 3300034107
• Scaffold ID: Ga0335037_0002092
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10711
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (73.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015601	Metagenome / Metatranscriptome	253	Y
F024558	Metagenome / Metatranscriptome	205	Y
F054039	Metagenome / Metatranscriptome	140	N
F061859	Metagenome / Metatranscriptome	131	Y
F066790	Metagenome / Metatranscriptome	126	N
F078723	Metagenome / Metatranscriptome	116	Y
F080054	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335037_0002092_10301_10582	F061859	GGA	MTVEALLIIIGLCLVACYLVYRWQESVVDMAIPPYQEPVKPDMVDQWKAATKADTLDNIDSWNMKIGDKIWHKADATPLNPKAAWPFPSGDKP
Ga0335037_0002092_1102_1263	F066790	GGA	MLSNLMQRVRDMFKTYTLEDFISESDPKDYKDIQRLEAVWQNYQERKLFNNCY
Ga0335037_0002092_2763_2966	F015601	GGAGG	MAGYTKQFLIDAFMSRYVNCDHLSIEKLERLEIMANDLYDRVGRDSFRVYACLDAEAIREYKNKVTA
Ga0335037_0002092_4520_4753	F054039	GAG	MTDISPNYKRLAKILNKTRKSLTQTCHELGIDVDDIEDHVLVQVIDQCSHCNIWSQQLVKDLDYNPVCPTCVRLTGL
Ga0335037_0002092_5209_5409	F080054	GGAG	MSTQLNYTAELEALILDVLLPVYEQHCRQRGIASLRSEINPELLKQLHKKKTIPRLFMPKLKDNHA
Ga0335037_0002092_5558_5875	F078723	N/A	MSYDILINNLVNGESVTVTKPDGTTYLEPRPPNRTALAAAKALQNLQNQLNFGTSAINQLTKERNELVDFITRLQEQNKRLQHEINSKTSATASSAGNSDSPTAG
Ga0335037_0002092_8566_8940	F024558	AGGA	MIVVIYTEDLEPIIPIDLPLWLLDRLEQEGAVRVAVSKPMGFRGERIPVGMVGNEDMPTVRIRYEKLRWHDGSLKTLLVTPDEELALTLTPEWLPGQRAPIQLYLNTVRKMHDELIKQIRKNQS