Scaffold Ga0335037_0001464

Overview

Basic Information

• Taxon OID: 3300034107
• Scaffold ID: Ga0335037_0001464
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12701
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.81%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F068425	Metagenome	124	Y
F071219	Metagenome	122	N
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335037_0001464_2619_2825	F071219	N/A	MIHSHQPDNSILVIITSVIIQAGVWTSDWFGNMNLVGIYDTIYDFAKLGALIVSMWASYRVAKKNKNE
Ga0335037_0001464_6166_6759	F068425	N/A	MVMGANNNNMKPHHQIITFAALCLLLIIGLNHCAKEKPKPIPFDYKTEAEMIKKQFGIEQAILLNQLEAVNRRLQVANDAKDSIRKREISLSNTNIALMKKLRNTLPKECDTVFVLCDEIINVKDSSYAALFNAFQVCDSVSTIKDSLIVNYKAENVTDSTLLVISKQETKQQRRGKVAAWCVGGAMFMLWLFVGLK
Ga0335037_0001464_7360_7545	F049410	GGA	MTRNTRYTNGNEIITFVKIDFIVIGGRKIDHVYFRRKDKHDLIMPLVEWNIKGKFEWEII
Ga0335037_0001464_8824_8994	F102493	N/A	MKTTTLTLIWDYEEDDRENNIRGGWVLIDATNGNKQVHLSAKLEELLNEELNPENL
Ga0335037_0001464_9496_9657	F044325	N/A	MKALIQRLLFGYKPNPNATEPKRGSILKYKGHNAEAIHSALVLLKFNLENAKN