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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034107 Open in IMG/M |
| Scaffold ID | Ga0335037_0000225 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37261 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (74.55%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000220 | Metagenome / Metatranscriptome | 1544 | Y |
| F014737 | Metagenome / Metatranscriptome | 260 | Y |
| F043944 | Metagenome | 155 | Y |
| F045619 | Metagenome / Metatranscriptome | 152 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335037_0000225_13025_13663 | F000220 | N/A | VEHNALFGKKMSDEKNDILSKVLSYVDSPFKLFALLLMAVFTFAGYFVWQNQSFLFDAYKENKKLPTIAEDRVEDVAAHLFKNTNANVVAIFKVNPLFGTRILYRAYTREGRDKTHEGLDVGLFTQSSANNRDVVALMANEIPCSEYAVPQSEMGLWYIDKGMTFGCRVSVPPEQGRFVGQITVGWEKEPKDIHKEMSMLLIASNMLSKSKQ |
| Ga0335037_0000225_14375_14683 | F045619 | AGGAG | MSEGYNWTINSLQVLNSPEPQTVVMSNFTIAKDGQQVNYSVNLLPANPDNFTPFDQITQAQALEWTQAALGPERVTNMETEVDFLIAQAAVPTPQPAPLPWG |
| Ga0335037_0000225_23253_23906 | F014737 | GAG | MTTINAVTGSQINHAEFVKLTVGTAGTVYTFCNAAAPITVGGNTFSNLGALLNVSDVQRDIKATSDDMTIALTGIVPANISVILSNDIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVAITEDFNSEMRTRVATCSISCSSMRRVLENRLSGVRTNKSNWQFIYGTSETSMNRVSEISNTYFDFGAPPKTQTQSSETTTTMDNSAGDAAP |
| Ga0335037_0000225_26462_26791 | F043944 | N/A | MIFNGHTLETIQDIDDVTMVNIQTMYADGLVGNYGILTQIATLTNGVFNYMRPPNSPPYKLANVLGSAYDYIYPPLPETTKQEAVNNSLLMFMTQAQGFDKKLFEVKHG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |