Scaffold Ga0335037_0000219

Overview

Basic Information

• Taxon OID: 3300034107
• Scaffold ID: Ga0335037_0000219
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37918
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (32.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F040698	Metagenome	161	N
F048800	Metagenome / Metatranscriptome	147	Y
F061533	Metagenome	131	N
F097170	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335037_0000219_10566_11093	F048800	N/A	MDNQSSSPALTFPNVPIDFCPTGNWSEILQEFIDVVLVNGTINVPGLGDVTPEQIAQIQEDLADQQNQIDALEAEGTALDLRIDALEANPVVKVRYGTISSIPTGDSIQTVSFTGLPTATYGVSITPICNATIGASATPLFALVDASKTTTGFSIRVENNISQITSVDWMAVHTS
Ga0335037_0000219_11295_12257	F014513	N/A	MGDTLKEMAELVKGFVGDSGVCSDERAFKAINQARRLLWNKRAWTSQEEYVQICCVNDCFTLPNRYEQIKLAWVGNESVSLADEWFNATNAFALNADQSCHRLITEVGGKHVLFRDYTTHFYRLGVMLESAEDIGVTLTFEVQDQYDTYHTIKVTGVNPPTLAQSDLLIKGVRSVAKPATKGRVRIYAYDTALEAKTLISVYQPNDVNPSFRRFKAPRTCECITLYASKRYFDLVDEQELVEFIPDSMIYAILALNSRDNRKAQEFLMNLDLAIKEQEKEMSNEEIPTAAPIRFANYSRAENLIGSDLLSPSANDYFLYR
Ga0335037_0000219_24040_24843	F061533	N/A	MSNQLDGIEQKDIIKRVTGKVTKLWEPKTFNGPKGEFVIQGGEIEIDGQTYGLKFFNNNQEQSIKNNVVTLSSVRGKHGLTGVTLEHESYEGKNGKVDRDIIKVTATGKIEFDQPNEEPARVASKIIVTDNPVEALDKIVELHKYVDSLVRHAYKGVGDEETLRAYVSSVFIEANRKGIAFKSEVKAEPKVEEPKVVELDPADWASAIVPSGTQKGKKLAEIGKPALTKLYEFYLEKGFSTPFAKCVEQAAADLDLDAPVETDDIPY
Ga0335037_0000219_28439_29014	F040698	N/A	MNKTPELDANTLGRGSRKKWDMEKIETLFMGGAEMSDILKLPEFSLMSKFYLKNCMVKGKWIDKRKRLREEVANVVAPKLEDAMASETIAHYAFMLREIAAERVQIETRHKSGNIKDQAQRLDVLAEYEKIATRALGLDENNMHDRKGLSVNAMISLHVSGPTKADKVEIVSTQYVDAAEGLENNEKTDTE
Ga0335037_0000219_9017_10573	F097170	N/A	VIYFLKIVNNIAYAYKIIGGNDPGMMHTFFVQAEDRVYIQNGYQNAIAWDGDLSVPAYRLNPYLKKMPIGTIMEYAFGRVFVTDRLNQIYASDIIYGAGFTDTKNTENFTEIGYWAEGGAFSTPSMMGNITGMKVMPQIGTNLRAQGALVILTANGAFAMDVSIPRAQWATTNMQTISLLGRGCVSPSTALANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVSNDTPWLKQFASTMFFDNYLISTVAPETYRAAGVEGLNRYHRGMVVLDLDQSSSPSPDAQLSFRWNGIWTGFRPTQLLSALITGQKRGFGFSFDNDKKNRLYEFTNSTGSDFGANGTRAIESFFTSGRYDFAQSGASNKFLRKRITGGEMWLSEIKGEVTSKAEFRPDSYPCWSELKVPTTYGCNPCSPVLKTPCNPRRGGDSYKRYKFNSPDPSECNYISDIPVIEGSEFQLKINLTGAATVDRVRIMANIKNLEDSPIGDCPENDQECPDINCCPERYYDYSING