Scaffold Ga0335037_0000100

Overview

Basic Information

• Taxon OID: 3300034107
• Scaffold ID: Ga0335037_0000100
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54925
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (81.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032284	Metagenome / Metatranscriptome	180	Y
F048997	Metagenome / Metatranscriptome	147	N
F059005	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335037_0000100_31573_31929	F059005	AGGAG	MVEIDNHSLIQTVSLVALAVVAFSVGIQKLLKDWKSTHAETSVITLMHTELERMSQQNGLLATELNRLQQEMILLNTQLAQLCIENQQLQTEVVALTEEVNKFRISATIAAAKKVKVG
Ga0335037_0000100_48605_48934	F032284	N/A	MSVGMTKDAYFEMCEELGNEPLESEIPVDFEDFPLEVQQAFNAYKMLRDEWDTMSGSYLGKSLIGVKDILEATEIDVSEHKLVIMLIRIIDNVRSEEINNKKKMQEPAS
Ga0335037_0000100_846_1229	F048997	N/A	MTLFFNLGLLESETQCDSVKLVETLRLHFIRKSIPKNKYSKIKPIFNLKGNSFLINPARLFTDTSTDIVHKAQYIRLAGRRNYAIYKHYGYTYLDLSFYSDIDLNAIKSNPLLKITENKINFKYEEK