NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0651820

Scaffold Ga0335036_0651820


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0651820 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)631
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001019Metagenome / Metatranscriptome804Y
F001781Metagenome / Metatranscriptome635Y
F023347Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0651820_2_253F001781GGAGMKPDDKIKLNECLKILDSTDLGLSLVWLWTWSTIKGILEDNTYRASVTEDQMWDHLCEAVEAGMGFSLEYGAEQHNEDVLEWML
Ga0335036_0651820_243_470F001019AGGMTYEPSLEILEVEYSCSPGGVDIFEVYDKSDIPLDMPIYETEDLTKAVLFCYNLGKDFTVRTLAEWNERELAYEA
Ga0335036_0651820_467_631F023347N/AQDLASALEQEELSEEAMDSMVRTECEGRLDTLTELYNLTYQLSFAIAERQGQKV
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