NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0410306

Scaffold Ga0335036_0410306


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0410306 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047653Metagenome149Y
F059956Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0410306_253_654F059956N/AMMGAGTKEAIMASDTPGVCIVPKLKKGQLVRVRQGASGTRSLTSAERNAWYEKFHADCRAGRDVWHDSAGESRLAPSQTDTDFSVGKILTVTVASASPKRVGMYFSGRGRYCMVLDTVTGQEWMVAKRYLEVV
Ga0335036_0410306_654_866F047653GGAGGMQSGDLVFIMGDPSRPILGTRTVDGLNCTETITHGTPALVVDVDILDHAAKRVHVEVLVQGMTLWVPGGFV

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