NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0252260

Scaffold Ga0335036_0252260


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0252260 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1194
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014089Metagenome / Metatranscriptome266Y
F037494Metagenome168N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0252260_277_468F014089N/AMSDLIEIIYPQSMTAKLLQNGEVIAEYKIEQCDGCSRLKKLDAFGYTKGQGGEKLTWLCGDCR
Ga0335036_0252260_465_959F037494N/AMKIKPTIEDKVLAHTVALERIAQVNGHADDKSRYDRQLGFHDYVAQVAESIVAEILVARYLGFTNFDPRSSQFKKTADVGSFIEVKWTRYESGQLIIYENDRQSDVAVLVVGTSPNYRLAGWIPVAMAKRPRYRHAKQPTWWVTQQNLQPIENLKGSNYGQAAL
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