Scaffold Ga0335036_0235898

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0235898
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1247
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004666	Metagenome / Metatranscriptome	428	Y
F008305	Metagenome / Metatranscriptome	335	Y
F038669	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0235898_1109_1246	F004666	AGGA	MTTKREYLKSKGITVGRRGRFSAAADHAISEAVKNGVEFTKEAPVK
Ga0335036_0235898_344_598	F038669	GGAGG	MIMSDKLEPRLQKLVDMGEPGTDIMHGELKNLMYETEQSLLNVSQSQDTPEYNYLLGRLDALTECYVLTYNLAFALNERIVARG
Ga0335036_0235898_36_197	F008305	AGGA	MLGYTYKDIQNFGNSLTVAIDSAADPDVKQGLLTIWDFFEGLLAEGYVQGESY