Scaffold Ga0335036_0198213

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0198213
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1393
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F056554	Metagenome / Metatranscriptome	137	Y
F098561	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0198213_426_746	F056554	AGGA	MSISLGKDASAPPFGEGIISASFTEECETIDISNRANVGGSAGAPGRRVSRAGFVTKTWEIECHDPDGLITSLTAAGTAGSFSIMSVSENIGIDGAVTYNVTAKEF
Ga0335036_0198213_64_426	F098561	AGGAG	VAITLGKDCSIMLDGGYIFSARNVTLTESARTIDVNPYGSRYAATYNTGYDCTVSVELNNVSDLGTAFEKMHTGGTFTVWGGAAGFSFLAVMTGIAETDPIDGVATFVLEGRMTDPRLAR
Ga0335036_0198213_773_1105	F034165	GAGG	MPIGSVEITLGKDVTITGVANARSCTVTNSASDVDVTKFGDTSRKFRKALIEQTIELECVDDPGVSVGGTFTIGGTQTGNATYICTNIAKSQPLDGIETFTVSGSRTVSA