Scaffold Ga0335036

Basic Information
Taxon OID	3300034106 Open in IMG/M
Scaffold ID	Ga0335036_0137519 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034106 Open in IMG/M

Scaffold ID

Ga0335036_0137519 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1752
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

1752

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F015702	Metagenome	252	Y
F020863	Metagenome	221	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F068766	Metagenome	124	N
F073256	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0137519_1105_1281	F023834	AGGAGG	MSEPTVDYWKAKADLCRDLALIQIEDEETEKEAGMNLMRMVHALSMVDTFNEGGSDDD
Ga0335036_0137519_1271_1441	F015702	AGGAGG	MTIKEVELEYTVYNLVQLARKVWGDNADEYLAGRLESVITYNQMKVLIDSLKEESK
Ga0335036_0137519_133_462	F020863	GGAGG	MQTTMEEVRSLVKVLEELIQPLFEGEVVEDAPYESMKRPHLVLQEGSKTYGRAWRIHFTGGSKYGSGHWEPRGFSDYLGGTKAEAAQSLRKLIAGIRTGLLIAEKEGKA
Ga0335036_0137519_1438_1692	F068766	AGGAGG	VSEDNVVGFHPKNKLVNFYEIATEEGNAVWGGEDPHSAVQWLRQAPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGVQ
Ga0335036_0137519_459_626	F073256	AGGAGG	MKLQEVDTIQDLREWVEENMPGARLTVDSAGDIVIHTGLHSTMGGYLHKGGEEDE
Ga0335036_0137519_722_967	F026864	AGGAG	MTEEENKVAQFVFTVVIAPANKQYDVELWDFAGDEPKQLSTGTGSNWRTALGEALSKIELPVDKQEKTINDLVKESAEDEG
Ga0335036_0137519_957_1112	F003212	AGGAG	MKDRWLVTIEIETYDGDPKAWDWDILLGNEDTSKVISSEFKGRVLKEDSNV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335036_0137519

Overview

Ecosystem & Geography

Associated Families

Sequences