NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0115596

Scaffold Ga0335036_0115596


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0115596 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1949
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003863Metagenome464Y
F017972Metagenome237Y
F058947Metagenome134Y
F083706Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0115596_1308_1589F003863GGAGGMESRQVSGRQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINPDSRLTVGIHTRANTSLAFGDPADAGEDEGNNGGEA
Ga0335036_0115596_1586_1891F017972GGAGGMKTRHLSLVTQRHSVTTRVRSNVSSPFGPVNPASTTLLAQETLRANQEARLLELLNSLESVVDNLNFKSFTAYDTLVIATEAVRVALLDTQTDEAGTDETT
Ga0335036_0115596_321_476F083706AGGCGGMENVTPRGWFVLGVVTGLAVWGLWEIAAHLFWNGSGWEWCEDLATCEGEGK
Ga0335036_0115596_476_634F058947GGAGMISCELQDLEQIMSKTGVLLTGNAYDKAQDYLQDNCSCATYNYLLGYKIGRE
Ga0335036_0115596_782_940F000821AGGAGMNREYLEAKFDLCINEAEKDLQQEEIARAIANLKRANSALSQLFGFEEDESE
Ga0335036_0115596_981_1238F001477GGAMGDSNIYTIHPPKSDLILFYEVVTPEGENEWGGANAEQCIQWLSLAPNGSRVLVSAWDSDEEDAHLVGQTIDVTEIIQQARQVGR
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