Scaffold Ga0335036_0115487

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0115487
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1950
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003195	Metagenome	501	N
F005452	Metagenome / Metatranscriptome	400	N
F091350	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0115487_1_507	F003195	N/A	LDQIIDSAEQTILPLLTQYQSSVTFANVDDSVIYFTTMRPNYFVPGQSVVVTGAGTYNATYTVTDDRIEPYIFTATTAAADRTYPLPFIPAAFATLSGGSAAQLYANTPPVENAILVVSVEIFQSITAPGNQIMSDNFQPSPFVLGRSLTNRVIGLLGPFIDVETMCQ
Ga0335036_0115487_1701_1949	F091350	AGGA	MATETITYDKSDLRGIIKAFKAMDDQAVSQAKAVSNGLATYLQSKIVSVAGGRPNKAASRIAQGSRVSKSSKIGEISFGFVSQ
Ga0335036_0115487_504_878	F005452	N/A	MSIESAIRTPLKTALSGIAANVYNGIPETMTSPSICLIPDAPYLESVLINGSTTKVKINLTVTGVVAYANNAAALDNLETLMISIISAMPVGYEVGNVNQPQPLEVGAGKYLTADLQVSTYYTN