NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0089914

Scaffold Ga0335036_0089914


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0089914 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2271
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014089Metagenome / Metatranscriptome266Y
F024931Metagenome204N
F025683Metagenome / Metatranscriptome200Y
F033645Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0089914_1205_1411F014089AGGMGTPGMSDLIEIIYPQSMTARLLQNGEVIAEYKVEQCDGCAKLLKLDPFGYKIGQAGEKLAWLCGECR
Ga0335036_0089914_1393_2058F033645AGGCGGMAGFLENYEDVAARIKRLWETHPSARVETNIKHFDAEKGYVLIQAMIFREYEDEKPSAVDYAFGNVATYNVQMKKFFVEDTVTSAIGRAIGLLLGTDKRPTLQDMQKVETISATVAKSTADDYDPWAKKFGDVPSHKTAAEAEQAGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHMIWKQAATGSAKNWGGYFCTERTKTTQCTPRWYVLTSSGKWAPQV
Ga0335036_0089914_2058_2231F025683GGAGMVLDLLDPQTLGRLVLVVILMVISAAAGYAKGFKEGKREGMARRKAMVRHLSNKAVN
Ga0335036_0089914_717_1202F024931GAGMTLTREEETVCMLAAVKLQVDNRKFGDNPQRHQKELATFEYLVECAEAIGSEWVVAKYFDLPFNPYENKFKTKADVGNAIEVRWTKYVAGQLIVHEYDRPNDIAVLVTGQSPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI
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