Scaffold Ga0335036_0074710

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0074710
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2533
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F046686	Metagenome	151	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0074710_1124_1303	F023834	GGAGG	MSEPTVEYWLAKAELCRDLAVKQIIEGDEKIGKEAGANLMRMVYALSMVDTFKQGGRDE
Ga0335036_0074710_1432_1689	F068766	AGGAGG	MTSEDNVVAFHPKNKLVNFYEIATAEGSAVWGGEDPHSAVEWLKQSPLNSRLLVSCWEAGEEDARLMIEPIDITKVVFAVMAGMR
Ga0335036_0074710_1759_2067	F055450	GGAGG	MTEASNKRLIGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTVPVVGVRIQTAEGRGAPATKGSSDRSTDEGNDGGEA
Ga0335036_0074710_2151_2348	F046686	GGA	VRAGLTTSQITPEVRLTELLNSLESAVESLNYKSFVAYDTLNTAMENLRVALSNIVTEEDGTDTL
Ga0335036_0074710_753_971	F026864	AGGAG	MMSEQDKMAQFVFTVVIAPANKQYDVELWDFAGTEPKQLATGGGSNWRTALGQALSKIELPTDKEGKENEEV