Scaffold Ga0335036_0070386

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0070386
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2623
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F017972	Metagenome	237	Y
F093483	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0070386_1161_1319	F003212	GGAGG	MKDRYLVTLEIETYDGDPKNWDWSHLLVNDKTKFIESQFKGRVLPEEGEGNE
Ga0335036_0070386_1534_1692	F000821	AGGAGG	MNREYLEAKVDLCLNQAEIDLQQEEIARAIANLRRANSALSQLFGFEEEDNE
Ga0335036_0070386_2054_2338	F003863	GGAGG	MESRQVSGKQSIHYRNYRRARDKALVRLAHLYPETYKQLLDEQRSFDEQEGKTWIIDSNSRLTVGVHTRANAVPDVAGRTDYESPDESYDGGEA
Ga0335036_0070386_2335_2622	F017972	GGAGG	MRTRHLQLVSSEHSVTTYNRESVRSHFGPVRADSTTWLARETLRANQLAQLSELLSCLESVVENLNYKSFTLYDTLNTVIEEVSAVLSGTPIESAG
Ga0335036_0070386_478_654	F093483	AGGTGG	MTIEKTYAGALVVSELVSWEGVKWLESATYYGYTVQEAKRSFLESCARLNYKIEGEGK