Scaffold Ga0335036_0063438

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0063438
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2789
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009887	Metagenome	311	Y
F026555	Metagenome	197	N
F033425	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0063438_1608_2114	F026555	GAG	MSNFDYHKAMRDGHGYNLYVADLLRHFGVPKVDVPEFSIATTHDQIRDKTLNEKDIVVDNLILEVKSSSRSFEDVDDFPYNPLIVDTVQGYEMKIIKPFAYVMISQITHATFVIPTATKYDWTISTFYDAQRDIQEQFYMVTKRHCRPFIEMVDILLERADERTNQMQ
Ga0335036_0063438_2107_2292	F009887	N/A	MEMIDPNGVRATFTDDKVVVDIVPLSECCEFCNDPRMLNESGVRTCVGCGCVNHIEYKIN
Ga0335036_0063438_44_301	F033425	GAGG	MAIITKQVTVTGTSQSIISVDNVTRDVLLHAKHEIYIGNSGVTSTSGYIMDNGDVLRMSLVDGEDLWAVTSGGSGTLHVLASKVD