Scaffold Ga0335036_0033915

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0033915
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3996
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F017972	Metagenome	237	Y
F044984	Metagenome / Metatranscriptome	153	Y
F060700	Metagenome / Metatranscriptome	132	Y
F083706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0033915_1851_2015	F000821	AGGA	MNKEYLEAKFDLCINQAEIDLQQEEIARAIANLRRANSALTQLFGFEEEAEDNA
Ga0335036_0033915_2315_2470	F083706	GGAGG	MEHLTPRGWLVAGILIGLAVWGLWEVASHLLWTGSGWEWCEDLLECEREGK
Ga0335036_0033915_310_618	F017972	GGAGG	MRTRHLQLVSQKHSVTTTTKFNASSPYGPVNPASTTLLAQETLRANQEARLLELLNSLESVVDNLNFKSFTAYDTLVIAMEGVRVALLATPTDEGGTDADRC
Ga0335036_0033915_3101_3355	F060700	AGG	MKKTLKELAAEINIDEKYFENNFLMLDNRYAIMQDEKGLHLTDVLSWASFNPRTIGRQSNATIKGLQFQLGQYKVYIKQLQEAK
Ga0335036_0033915_615_914	F044984	GGAGG	MADEVKRRLETASRKAVRDRNYRRARDRALARLAHLYPDTYKQLLEMEKKQDELQGKKWISIDGTTVLSVGVHTRATGADDLAYASNAGENEGNNGGEA