Scaffold Ga0335036_0031471

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0031471
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4172
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F042337	Metagenome	158	Y
F092051	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0031471_1035_1277	F092051	N/A	MKSFKIRENLILIDGVLYGPTPTDVKIKGKVGMIQSIGVPNKGQFFPYSGTFIDDTIVVTEDSTGIVEETKPIKKTRKTK
Ga0335036_0031471_226_570	F042337	AGG	MELVIEGLDKLRHYTHHGRKIGNIHIDTRGRYSNAKSYVFTFPPIGNGLEGWDKELEVYLCKYPTPNEQYELFVMGLHGVTCDYLELKQIRDIDIFQAHIISVMNRAKTYWETL
Ga0335036_0031471_3896_4162	F001754	N/A	MSNNPRFEVVVSFRDFMGKEHNIVCKTRKKLVEANQFLKMFKTESVAIGKILGEYPVVMGEYPKKYHSEIKRELASAGFGSVSNFLIK