Scaffold Ga0335036_0020221

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0020221
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5351
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009503	Metagenome / Metatranscriptome	317	Y
F014089	Metagenome / Metatranscriptome	266	Y
F024931	Metagenome	204	N
F029675	Metagenome / Metatranscriptome	187	Y
F033645	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0020221_2_568	F029675	N/A	NGYVQITANQARAAGLRIATRAGDVRNNLTIKYGATSSAEKSASDATSILNYGTLSQIITTTLHNAADAEDQADFYLALRKDPQAIFKEITYDLTNPEVDNSDRDNLIGVFMGLPLSINDLPSNMGSIFQGFVEGWTFRAGYNTLSVSLNLSPVAYSLQALQWDEISNTFTWSGVSPTLDWARATIIT
Ga0335036_0020221_2956_3621	F033645	AGGCGG	MAGFLDNYEDVAARIKRFWETHPSGRIENHIVEFNAEKGFILIQTQIFKEYEDEKPSAIDYAFGNVATYNVQMKKFFCEDTVTSSIGRAIGLLLGTDKRPTLQDMQKVETISTTVAKSTADDYDPWSKKFGDVPSFKTAAEAEQSGIPSLGSSMDEVAKQLGGQLVAEAPQCSHGHMIWKQAHEGAPKNWGGYFCTERTKATQCTPRWYVFSSDGKWKPQV
Ga0335036_0020221_3603_3809	F014089	N/A	MEAPGMSDYVEIIYPQSMTAKLMHNGDVIAEYKVAQCDGCALVTKLDAFGYKIGQGGEKLAWLCGGCR
Ga0335036_0020221_3812_4297	F024931	GGTGG	MTLTHAEQMVCMLSAIKWETDTGKTMSNPQRYQKDLSTYEYLVETAEAIGSEWVVAKYFDLPFDPYQQKFKGTADVGNAIEVRWTKYVAGQLIVHEYDRPGDIAVLVTGQAPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI
Ga0335036_0020221_4278_4439	F009503	AGGA	MDKVQFECRKCKKITVQLIHKITDNLPDGVEVIQCTKCEVMGVAQIGDSNANL