NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0017399

Scaffold Ga0335036_0017399


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0017399 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5824
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031407Metagenome / Metatranscriptome182N
F034112Metagenome / Metatranscriptome175N
F064518Metagenome128N
F100712Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0017399_1057_1938F034112AGGAGMVIFNIGNKQIKYNYPETASDITLEQYIYFAKFLLPQHPKVELEAIQYMNERDAVYQKILPYSKKLKVITKDALQINVVCDLGKILQENEVKDNVRRFLPPLIEQWNTLDKELTTRLEIMDEVWEANVRYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVFIYTKIMSAINTPTETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGEPEGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSEKYMLDLQTSMLERAMANLN
Ga0335036_0017399_1989_2138F064518N/AVAESGLFNLSGYTPMESAEKAKLYQVFQYLASKAAEEKVIDDLSKQTKK
Ga0335036_0017399_4385_4915F100712N/AMEASLQKLADEISVLAISVVANEWRLQGHELTGSAVKQMETMVRMEINTLIIEGFVPDYMAINNQGVPANRIPYYPGSGRKESEYIKGLMKYVQQRMGKSEKESKGIAFAIASKHKKEGMPTKNSVIKYSKTGKRTGFIEQALDKNSAKFIELIENAITFSVETTIESYYKSILNR
Ga0335036_0017399_764_1057F031407N/AMTDKEKALIIIDLIEKITQEIIDKPMQRKRLLQMRGHLEKAVKLTGNGIKREWTRPPSLPLVSHAKAEPVPFKPATTETNGDLLADNIPVTKKARRK
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