NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0016514

Scaffold Ga0335036_0016514


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0016514 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5993
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016643Metagenome245Y
F026215Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0016514_1_264F026215GGAMAAFMDGYEGNKERTDRWIATFPQGRLETHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAYGYLAAYPDKMKRWMVEDTVTSALMR
Ga0335036_0016514_2925_4172F016643N/AMSIFNPIWRVRIGGVEYTNFALANLSITSGRTNIYEQANAGYVNLQLINLDQSIIDIEINDAVSIELQDSTNTFVPIFGGTVVEFDINIAASGVVAINQSVSIIALGALSRLPKSLTEGVLVKDNDGDQIYSVLSDLLLNTWNEVPGALQWNTYEPTTTWANAENIGLGEIDRPGEYELAKRNASTIDVYSLVSALATSGLGYIYENAQGQISYASALHRSIYLATNGYTDLSAAQAIANSLSIQTRSGDIRNDITLKYKENSTLEVTDSDPASILAYGPLAQIITTTIENQTDAEDQAAFYLGLRSYPQANFRQITFELTNPEIDDSDRDSLINIFMGLPLRITDLPLNMAAGTYLGFVEGWTWRAAYNTVSVTAILSPLAFSLQAMQWQDVSPAETWNSISGSLDWATALVVA
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