Scaffold Ga0335036

Basic Information
Taxon OID	3300034106 Open in IMG/M
Scaffold ID	Ga0335036_0014746 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034106 Open in IMG/M

Scaffold ID

Ga0335036_0014746 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6364
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (39.13%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6364

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (39.13%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014710	Metagenome / Metatranscriptome	260	Y
F026209	Metagenome / Metatranscriptome	198	Y
F076813	Metagenome / Metatranscriptome	117	Y
F080837	Metagenome / Metatranscriptome	114	N
F088194	Metagenome / Metatranscriptome	109	Y
F102437	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0014746_1781_1978	F076813	N/A	MKHKHEFDTRGELRDIFAALAMQRLIDGEATPKWVAAQAYRYADAMLDARDEVSHTKTKETLINE
Ga0335036_0014746_1980_2213	F088194	N/A	MMNEVAATTEETTAYALGTTISTLTNLKRMVAQNMTDYSNNLEGMRGLHPMWSKSELMDQFDRAINKLNTITYPYKY
Ga0335036_0014746_2498_2719	F102437	AGGAG	MMTSKLRAFEDTVLSVREPRELKGSLICSIQDSDIPTADKRKLIVAIDRCMTIKDIQRLFYNALLKYEGCGVI
Ga0335036_0014746_2719_3042	F026209	N/A	MMKNRTVTYEMYDDNTGEWRNVTEPAVGGIKWEKRESLGGEKQSAYYDHSFYKVPFYGPYDQGRIHRALNRLYPARFNKFGGYSTVSAVEKLDDQHIKVEMCYHIGD
Ga0335036_0014746_3255_3572	F080837	AGG	MMKTKAKQKHEFFPKMMTTQVLRPYLKEAKRVGYTVSGSVKDGFIAVVTDACEQHPAGEVVMRGVKKPGVNVWIMGFNTLYWQEPTIAECLAQSKWYADMEGKNK
Ga0335036_0014746_741_1040	F014710	N/A	MMNTTTTEYKVIPTQFKKKGFTYTQLKREGARAIFQQTREGSSLNNYEVVKIGRHNGYVMGGMSIEPAETYPGSSLWGITGWTCTSIDAAMRRYNDLVS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335036_0014746

Overview

Ecosystem & Geography

Associated Families

Sequences