Scaffold Ga0335036_0013179

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0013179
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6755
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018703	Metagenome	233	Y
F042747	Metagenome / Metatranscriptome	157	Y
F058947	Metagenome	134	Y
F082173	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0013179_1138_1359	F018703	AGGTGG	MSVIEKRIEGAKAQAVRQRNYRRARDRALARLSRDYPNVYRTYLEEEMSADEDMGKKWLDIAGNTKSSRFRRR
Ga0335036_0013179_2668_2847	F042747	AGGAG	MLGYSYEDIQGFGSTLRLAELMAIDTGEPEIREGLMKIWDFFEGLLGEGYIAEEVGASE
Ga0335036_0013179_3262_3417	F058947	AGGAGG	MTIPCELQELEEVMAKAGVLLTGNAYDTAQDYLQDNCACATYRYLLEGASK
Ga0335036_0013179_4291_4482	F082173	GGA	MAKQFKTTTLLADESGKVWAEAQLSEAQVKRIIKSYERVGVSLTAYGSPNQVLEQLRELEGAF