Scaffold Ga0335036_0010400

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0010400
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7638
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037206	Metagenome	168	Y
F044373	Metagenome / Metatranscriptome	154	Y
F081291	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0010400_2467_2640	F081291	GGAGG	VRRLDYWKAKLPGAQAEERIRQKELNQMARAFERAVEQVAEIQQRIDDEKAKLARPK
Ga0335036_0010400_3009_3254	F037206	AGGTGG	MKCQLCGSKTFVVNTTQQPGGIRRQRKCDSCKNNAYSAEVWIAGNVMVGKSIYTTDEVALIKKKGVDARRANEDRRKDNAS
Ga0335036_0010400_3244_3426	F044373	AGGAGG	MLRDGHFIQEELPRIGAHYVPQFYSRPSTPEERMVQDIVLGNRPSDESPLAKLFGRLLSI