Scaffold Ga0335036_0008245

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0008245
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8648
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F006539	Metagenome / Metatranscriptome	370	Y
F007469	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0008245_1264_1458	F006539	GGAG	MIETTAPWIVLYCIFGYFIGWGIYSTIKDNAFQSGYWKGRKDGYDMHRRITDAKRDQVFDYDKN
Ga0335036_0008245_141_323	F007469	AGGAGG	MGELQIIDGSGLTATFTNNGVKIEPSTVVCDNCNDDRLLHEGDLLRCYSCHAINRIPYNA
Ga0335036_0008245_2_148	F002162	N/A	MPNYDYMCDGEGLVIVLDLPMDHKIPHCQVCGAKLSRVFTAVPAIFKGT
Ga0335036_0008245_324_986	F002357	GGAGG	MAFNLADYEDVATLNKWFISNFPSGRSDISVISHDAVNGYILVQSTLWRDSKDEQPAVSNIAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVDVEPNQYEKKLAERRYSPPATRSAAVEDALRASFAVENKENDPAQWTVSEVVDQIASATPNEPPACEHGHILKQGISKGGKPYYGYVCKAKQCEPKWAKITANGKWYFEGGE
Ga0335036_0008245_4960_6207	F000468	AGCAGG	MTAWSPDWKLTVAGVDYTDIAISDIQHQAGRDDIYQQPNPSYLQITFVALSGQTLPFDINDSLSLQVKNTSAAYVNIFGGDITDITVSVGATGSNATVIEYTVLAMGSLVKLAKELYAGTISQDEDGNQIYDLLSSVLLGTWNDVPAATTWAGYDATETWANALNLGLGEIDQPGLYTMENRAAETDTIYNIASLIANSAFGYLYEDNEGNIGYADADHRQNYLLTNGYVDLSANHALGQGLSTITRSGDIRNDVYINYGNNFGSQKTATSASSIATYGYKAESINSVLHSAVDAQAVADRYIAQRAFPQPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNIQNLPAQISSGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQVAMRWNTTPITEAWNTLSPTLTWEYATIVA