Scaffold Ga0335036_0008124

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0008124
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8727
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008078	Metagenome / Metatranscriptome	339	Y
F064518	Metagenome	128	N
F100712	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0008124_1066_1593	F100712	N/A	MLDELQRLADDIAQMAIEAVANEWKAQGHNLTGAAIKNMETVIRMETDKIIIDGFVPDYMAINNQGVPSTKIPYYPGSGRKESEYIKGLMKYAKQRFGASDKEAKSIAFAIASKHKKEGMPTIKSQKHSKTGKRTGFIEEALDKKEAEMADLINRAIYQSMIITVETFYKSILNR
Ga0335036_0008124_2039_2224	F064518	N/A	MNDKYGWYLTIKKIAECGLFNLAGFTPLQSSERANLYEVFQYLASKAAEDNLYNEIQKQK
Ga0335036_0008124_3646_3873	F008078	N/A	MTPKEKADELFNHYYNLIQSIGGELGQEILVSILAKQSALFAAREVLKEKWNIEVEGSEDEYYYWEEVEHEIESI